Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRC rs12830678 chr12:29503676 C/T 1.35E-7 523 40.57 39.47 5.8 KM Plot
KIRC rs12831730 chr12:29521193 A/G 5.92E-8 524 40.57 39.47 6.07 KM Plot
KIRC rs12832263 chr12:29440705 C/T 6.53E-8 522 40.6 38.57 6.07 KM Plot
KIRC rs1284517 chr19:54024116 C/T 1.83E-5 527 39.38 40 23.33 KM Plot
KIRC rs12871459 chr13:85655232 A/C 6.46E-5 517 38.95 46.17 11.12 KM Plot
KIRC rs13017231 chr2:2608893 G/A 3.3E-5 527 39.23 45.13 8.35 KM Plot
KIRC rs13060020 chr3:48372646 C/T 3.59E-5 510 39.08 42.47 23.1 KM Plot
KIRC rs13061269 chr3:48373343 C/T 2.14E-5 508 39.17 42.88 23.1 KM Plot
KIRC rs13066044 chr3:48377276 C/T 2.75E-5 508 39.17 42.88 23.1 KM Plot
KIRC rs13066758 chr3:48343877 G/A 3.14E-5 521 39.62 40.93 19.13 KM Plot
KIRC rs13068265 chr3:48301614 A/C 6.41E-5 518 39.62 41.27 21.12 KM Plot
KIRC rs13069029 chr3:48355024 A/G 3.27E-5 523 39.62 41.27 19.13 KM Plot
KIRC rs13070210 chr3:48349503 G/A 3.27E-5 523 39.62 41.27 19.13 KM Plot
KIRC rs13081169 chr3:48356797 G/A 3.27E-5 523 39.62 41.27 19.13 KM Plot
KIRC rs13081633 chr3:48357281 A/G 3.09E-5 523 39.53 41.27 19.13 KM Plot